Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11713314	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13327745	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1497891	0.89[EUR][1000 genomes]
rs2133007	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28371986	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28722789	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4519701	0.80[CEU][hapmap]
rs56406114	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57668336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6443700	0.81[YRI][hapmap]
rs6443701	0.83[AMR][1000 genomes]
rs6791597	0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7633153	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7633630	0.97[EUR][1000 genomes]
rs7636793	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7637098	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7645817	0.86[AMR][1000 genomes]
rs7647003	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7647210	0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7650672	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs904241	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9832393	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9840876	0.97[EUR][1000 genomes]
rs9866700	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180281600-180282600	Weak transcription	Ovary	ovary
2	chr3:180281600-180284200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: