Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11713314	0.96[EUR][1000 genomes]
rs13327745	0.96[EUR][1000 genomes]
rs1497891	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1532485	0.81[MEX][hapmap]
rs2133007	0.88[EUR][1000 genomes]
rs2338436	1.00[CHD][hapmap]
rs28595523	1.00[CHD][hapmap];0.97[GIH][hapmap]
rs28722789	0.96[EUR][1000 genomes]
rs4519701	1.00[CEU][hapmap]
rs56406114	0.89[EUR][1000 genomes]
rs57668336	0.97[EUR][1000 genomes]
rs62291047	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6443696	1.00[CHD][hapmap];0.91[GIH][hapmap]
rs6443700	0.94[GIH][hapmap]
rs6791597	0.80[CEU][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs7633153	0.94[EUR][1000 genomes]
rs7633630	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7636793	0.81[EUR][1000 genomes]
rs7637098	0.96[EUR][1000 genomes]
rs7645817	1.00[CHD][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap]
rs7647003	0.97[EUR][1000 genomes]
rs7647210	0.80[CEU][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs7650672	0.87[CEU][hapmap]
rs904241	0.96[EUR][1000 genomes]
rs9840876	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851773	0.97[EUR][1000 genomes]
rs9858483	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9866700	IGF2BP2	cis	parietal	SCAN
rs9866700	TTC14	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180280800-180281800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:180281000-180281600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:180281200-180281800	Active TSS	Brain Hippocampus Middle	brain
4	chr3:180281400-180281600	Enhancers	Brain Angular Gyrus	brain
5	chr3:180281400-180281600	Enhancers	Ovary	ovary

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