Variant report

Variant	rs28374840
Chromosome Location	chr7:99195774-99195775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231948	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10249659	0.88[AMR][1000 genomes]
rs12386578	0.88[AMR][1000 genomes]
rs13438585	0.88[AMR][1000 genomes]
rs28497153	0.83[AMR][1000 genomes]
rs28564953	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3197990	0.88[AMR][1000 genomes]
rs45558438	0.88[AMR][1000 genomes]
rs45599236	0.88[AMR][1000 genomes]
rs61435529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs940334	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2554756	chr7:99182537-99196388	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99194200-99197600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:99195600-99196000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:99195600-99196400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:99195600-99196600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr7:99195600-99196600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:99195600-99196600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:99195600-99196600	Active TSS	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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