Variant report

Variant	rs61435529
Chromosome Location	chr7:99172709-99172710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99122361..99125551-chr7:99169280..99172960,3	K562	blood:
2	chr7:99169101..99171975-chr7:99172113..99174282,3	K562	blood:
3	chr7:99171149..99174284-chr7:99174652..99178986,6	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10085823	0.86[EUR][1000 genomes]
rs10231948	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249659	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10264303	0.86[EUR][1000 genomes]
rs10271695	0.86[EUR][1000 genomes]
rs10277362	0.86[EUR][1000 genomes]
rs12386578	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13438585	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28374840	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28378107	0.86[EUR][1000 genomes]
rs28497153	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28564953	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28734136	0.81[AFR][1000 genomes]
rs3197990	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45529834	0.86[EUR][1000 genomes]
rs45558438	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45599236	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45610838	0.86[EUR][1000 genomes]
rs60996680	0.86[EUR][1000 genomes]
rs940334	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99157400-99177400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:99157400-99177400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:99157800-99172800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:99158200-99173000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:99158400-99172800	Strong transcription	Fetal Intestine Large	intestine
6	chr7:99158800-99172800	Strong transcription	Primary B cells from cord blood	blood
7	chr7:99158800-99172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:99159800-99172800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:99160000-99173200	Strong transcription	Fetal Thymus	thymus
10	chr7:99160400-99177600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:99160600-99177000	Weak transcription	Stomach Mucosa	stomach
12	chr7:99160800-99177400	Weak transcription	HUVEC	blood vessel
13	chr7:99161400-99172800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:99161600-99177400	Weak transcription	Esophagus	oesophagus
15	chr7:99161800-99177400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:99162000-99177600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:99162200-99172800	Strong transcription	Placenta	Placenta
18	chr7:99162200-99173200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:99162200-99177200	Weak transcription	Gastric	stomach
20	chr7:99162200-99177400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:99162200-99177400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:99162600-99172800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:99162600-99172800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:99162600-99172800	Strong transcription	NH-A	brain
25	chr7:99162600-99172800	Strong transcription	NHDF-Ad	bronchial
26	chr7:99162600-99177000	Weak transcription	Fetal Brain Male	brain
27	chr7:99162600-99177600	Weak transcription	Small Intestine	intestine
28	chr7:99162800-99173000	Weak transcription	Hela-S3	cervix
29	chr7:99162800-99173400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr7:99163200-99177400	Weak transcription	Pancreas	Pancrea
31	chr7:99164000-99177400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr7:99164400-99175600	Weak transcription	Psoas Muscle	Psoas
33	chr7:99164400-99177400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr7:99164600-99177400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:99166400-99172800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:99166400-99172800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:99166400-99172800	Strong transcription	HSMM	muscle
38	chr7:99166600-99177400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr7:99166600-99177400	Weak transcription	Spleen	Spleen
40	chr7:99166800-99177000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:99166800-99177200	Weak transcription	Fetal Stomach	stomach
42	chr7:99166800-99177400	Weak transcription	Fetal Intestine Small	intestine
43	chr7:99167400-99173000	Strong transcription	Fetal Muscle Leg	muscle
44	chr7:99168600-99172800	Strong transcription	Thymus	Thymus
45	chr7:99168600-99173000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:99169600-99177200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:99169600-99177400	Weak transcription	Lung	lung
48	chr7:99169800-99173400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:99169800-99175000	Weak transcription	Right Ventricle	heart
50	chr7:99169800-99177000	Weak transcription	Brain Angular Gyrus	brain

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