Variant report

Variant	rs28375187
Chromosome Location	chr4:26843969-26843970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10001152	0.88[AFR][1000 genomes]
rs10004586	0.85[AFR][1000 genomes]
rs10029816	0.81[AFR][1000 genomes]
rs10470821	1.00[AMR][1000 genomes]
rs28396202	1.00[AMR][1000 genomes]
rs28495049	1.00[AMR][1000 genomes]
rs28626184	0.81[AFR][1000 genomes]
rs28728323	1.00[AMR][1000 genomes]
rs4422408	0.88[AFR][1000 genomes]
rs56169951	0.81[AFR][1000 genomes]
rs60948214	1.00[AMR][1000 genomes]
rs6848664	0.88[AFR][1000 genomes]
rs9997143	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv521924	chr4:26843494-26844674	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26840000-26858800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:26840600-26844200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:26841400-26845400	Weak transcription	Gastric	stomach
4	chr4:26841400-26858600	Weak transcription	Aorta	Aorta
5	chr4:26841600-26858600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:26842400-26858800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:26842800-26845800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:26842800-26846400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:26843400-26858400	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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