Variant report

Variant	rs28495049
Chromosome Location	chr4:26838812-26838813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10470821	1.00[AMR][1000 genomes]
rs28375187	1.00[AMR][1000 genomes]
rs28396202	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728323	1.00[AMR][1000 genomes]
rs60948214	1.00[AMR][1000 genomes]
rs9997143	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26830000-26841200	Weak transcription	Small Intestine	intestine
2	chr4:26831600-26841200	Weak transcription	Ovary	ovary
3	chr4:26837400-26839200	Weak transcription	Fetal Intestine Small	intestine
4	chr4:26838200-26839200	Weak transcription	Fetal Heart	heart
5	chr4:26838200-26839400	Active TSS	Duodenum Mucosa	Duodenum
6	chr4:26838200-26841200	Weak transcription	Right Atrium	heart
7	chr4:26838400-26841200	Weak transcription	Lung	lung
8	chr4:26838600-26839600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:26838600-26839600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:26838600-26839600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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