Variant report

Variant	rs28396202
Chromosome Location	chr4:26839416-26839417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10470821	1.00[AMR][1000 genomes]
rs28375187	1.00[AMR][1000 genomes]
rs28495049	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728323	1.00[AMR][1000 genomes]
rs60948214	1.00[AMR][1000 genomes]
rs9997143	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26830000-26841200	Weak transcription	Small Intestine	intestine
2	chr4:26831600-26841200	Weak transcription	Ovary	ovary
3	chr4:26838200-26841200	Weak transcription	Right Atrium	heart
4	chr4:26838400-26841200	Weak transcription	Lung	lung
5	chr4:26838600-26839600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:26838600-26839600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:26838600-26839600	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:26839000-26839600	Enhancers	Fetal Intestine Large	intestine
9	chr4:26839200-26839600	Enhancers	Fetal Intestine Small	intestine
10	chr4:26839200-26840000	Enhancers	HUVEC	blood vessel
11	chr4:26839200-26843200	Enhancers	Fetal Heart	heart
12	chr4:26839400-26840000	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr4:26839400-26840400	Enhancers	Fetal Kidney	kidney
14	chr4:26839400-26840600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:26839400-26840600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links