Variant report

Variant	rs28377791
Chromosome Location	chr4:56473181-56473182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56468709..56470290-chr4:56471936..56473680,2	K562	blood:
2	chr4:56471770..56474121-chr4:56475653..56477265,2	K562	blood:
3	chr4:56472523..56475869-chr4:56480434..56484043,4	K562	blood:
4	chr4:56472621..56475219-chr4:56475225..56477153,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10002268	0.85[ASN][1000 genomes]
rs10003113	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10003211	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10011137	0.95[ASN][1000 genomes]
rs10026692	0.80[EUR][1000 genomes]
rs10033028	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10517356	0.85[ASN][1000 genomes]
rs1077103	0.84[ASN][1000 genomes]
rs1077104	0.84[ASN][1000 genomes]
rs11133404	0.97[ASN][1000 genomes]
rs11735910	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11931026	0.85[ASN][1000 genomes]
rs11935806	0.96[ASN][1000 genomes]
rs11945558	0.85[ASN][1000 genomes]
rs12498734	0.97[ASN][1000 genomes]
rs12499623	0.97[ASN][1000 genomes]
rs12510588	0.84[ASN][1000 genomes]
rs12512220	0.84[ASN][1000 genomes]
rs13118189	0.96[ASN][1000 genomes]
rs1488939	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1809643	0.84[ASN][1000 genomes]
rs1844219	0.85[ASN][1000 genomes]
rs1844220	0.85[ASN][1000 genomes]
rs1906677	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1971991	0.85[ASN][1000 genomes]
rs2412663	0.81[EUR][1000 genomes]
rs28434169	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28448373	0.85[ASN][1000 genomes]
rs28626806	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28644417	0.85[ASN][1000 genomes]
rs28694060	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28713343	0.84[EUR][1000 genomes]
rs2899037	0.84[EUR][1000 genomes]
rs4865020	0.87[ASN][1000 genomes]
rs61072181	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6827359	0.97[ASN][1000 genomes]
rs6829182	0.81[EUR][1000 genomes]
rs6839462	0.82[ASN][1000 genomes]
rs7658532	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7660808	0.84[EUR][1000 genomes]
rs7680941	0.85[ASN][1000 genomes]
rs7690375	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7690566	0.83[ASN][1000 genomes]
rs7697972	0.84[ASN][1000 genomes]
rs9312664	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56464200-56475800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:56465400-56479400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:56465600-56476000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:56469800-56481200	Weak transcription	Esophagus	oesophagus
5	chr4:56470400-56478800	Strong transcription	K562	blood
6	chr4:56472400-56476600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links