Variant report

Variant	rs10026692
Chromosome Location	chr4:56452706-56452707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10002541	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10005989	0.96[CEU][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10009593	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10016506	0.85[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10034433	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1011095	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs10462035	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11133376	0.88[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs11133379	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs11133383	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs11133394	0.82[ASN][1000 genomes]
rs11133399	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11133404	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs11726609	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11733864	0.80[AMR][1000 genomes]
rs11735267	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs11931061	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11935806	0.86[CHB][hapmap]
rs11939815	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11947476	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11947623	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12499623	0.93[CHB][hapmap]
rs12512220	0.93[CHB][hapmap]
rs12646078	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12647592	0.85[ASN][1000 genomes]
rs13102385	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13121235	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes]
rs13128582	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13138697	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13152650	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1522106	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs1522107	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1522108	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1522110	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1522111	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs17085889	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1873092	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965467	0.80[AMR][1000 genomes]
rs1980273	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2130036	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140077	0.81[EUR][1000 genomes]
rs2177127	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2177129	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2412646	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes]
rs2412663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28377791	0.80[EUR][1000 genomes]
rs28434169	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28445925	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28448438	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28463765	0.84[EUR][1000 genomes]
rs28469692	0.90[EUR][1000 genomes]
rs28514423	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28525309	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28572116	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28582059	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28670674	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28673496	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28713343	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28790098	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2899037	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35767091	0.81[EUR][1000 genomes]
rs3736544	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs3805147	0.96[CEU][hapmap]
rs3805152	0.80[EUR][1000 genomes]
rs3805154	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805157	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3817444	0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3828481	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4580704	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs473005	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs480479	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs4864998	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4865008	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4865010	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4865018	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59804446	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60992571	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62303714	0.80[ASN][1000 genomes]
rs62309727	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6554286	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6554292	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811520	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs6812042	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6815516	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6817267	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6817663	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819660	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6824057	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6824955	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs6825994	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6827359	0.93[CHB][hapmap]
rs6829182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832769	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs6837710	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6839788	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6846427	0.80[EUR][1000 genomes]
rs6850524	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6851838	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6853192	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs726967	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7660054	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs7660808	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7667849	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7668147	0.81[AMR][1000 genomes]
rs7670225	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7673908	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7677526	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7680941	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs7684810	0.87[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes]
rs9312662	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9312664	0.93[CHB][hapmap]
rs9684708	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997288	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs9998038	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9998146	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56441200-56464400	Weak transcription	K562	blood

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