Variant report

Variant	rs11133399
Chromosome Location	chr4:56413831-56413832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr4:56411836-56413935	NB4	blood:	n/a	n/a
2	POLR2A	chr4:56412782-56413861	H1-hESC	embryonic stem cell:	n/a	n/a
3	RELA	chr4:56412897-56413871	GM18951	blood:	n/a	n/a
4	POLR2A	chr4:56411822-56413831	GM18505	blood:	n/a	n/a
5	REST	chr4:56411851-56414060	H1-neurons	neurons:	n/a	n/a
6	POLR2A	chr4:56411682-56413984	SK-N-MC	brain:	n/a	n/a
7	CTCF	chr4:56412586-56413999	SK-N-SH	brain:	n/a	chr4:56413699-56413717
8	POLR2A	chr4:56411885-56413986	ProgFib	skin:	n/a	n/a
9	MAZ	chr4:56411530-56414133	IMR90	lung:	n/a	n/a
10	BHLHE40	chr4:56411851-56413911	K562	blood:	n/a	chr4:56412397-56412413 chr4:56412373-56412389
11	MAX	chr4:56412803-56413974	SK-N-SH	brain:	n/a	n/a
12	RAD21	chr4:56412883-56413902	IMR90	lung:	n/a	chr4:56413700-56413719
13	POLR2A	chr4:56411287-56413878	K562	blood:	n/a	n/a
14	POLR2A	chr4:56411263-56413988	GM12891	blood:	n/a	n/a
15	POLR2A	chr4:56411860-56413877	MCF-7	breast:	n/a	n/a
16	POLR2A	chr4:56411759-56413859	GM12878	blood:	n/a	n/a
17	MXI1	chr4:56411663-56414396	IMR90	lung:	n/a	n/a
18	MAX	chr4:56413494-56413936	K562	blood:	n/a	n/a
19	POLR2A	chr4:56412798-56414097	U87	brain:	n/a	n/a
20	MAX	chr4:56411845-56414049	A549	lung:	n/a	n/a
21	GATA2	chr4:56412897-56414009	SH-SY5Y	brain:	n/a	chr4:56413892-56413902
22	CHD1	chr4:56413412-56413930	H1-hESC	embryonic stem cell:	n/a	chr4:56413593-56413600
23	ZNF263	chr4:56412921-56413944	HEK293-T-REx	kidney:	n/a	n/a
24	MAX	chr4:56412797-56413888	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr4:56411654-56413836	HepG2	liver:	n/a	n/a
26	MAX	chr4:56411790-56413861	ECC-1	luminal epithelium:	n/a	n/a
27	POLR2A	chr4:56411820-56413909	GM18951	blood:	n/a	n/a
28	MXI1	chr4:56410957-56414953	SK-N-SH	brain:	n/a	n/a
29	RCOR1	chr4:56411364-56414002	K562	blood:	n/a	n/a
30	POLR2A	chr4:56412678-56413969	SK-N-SH	brain:	n/a	n/a
31	POLR2A	chr4:56411770-56413881	H1-neurons	neurons:	n/a	n/a
32	NRF1	chr4:56412670-56414120	SK-N-SH	brain:	n/a	chr4:56413156-56413165 chr4:56413056-56413070 chr4:56413153-56413167 chr4:56412875-56412889 chr4:56412878-56412892 chr4:56413059-56413070 chr4:56412880-56412889 chr4:56412878-56412887 chr4:56412878-56412889 chr4:56413156-56413167 chr4:56413059-56413068
33	MXI1	chr4:56412934-56413889	H1-hESC	embryonic stem cell:	n/a	n/a
34	MYC	chr4:56411673-56414047	K562	blood:	n/a	n/a
35	POLR2A	chr4:56411943-56413949	HepG2	liver:	n/a	n/a
36	MAX	chr4:56412501-56414109	SK-N-SH	brain:	n/a	n/a
37	HA-E2F1	chr4:56412894-56413864	MCF-7	breast:	n/a	chr4:56413060-56413069 chr4:56413593-56413600 chr4:56413315-56413325 chr4:56413311-56413320
38	MAX	chr4:56411786-56413905	HepG2	liver:	n/a	n/a
39	MYC	chr4:56411722-56413997	K562	blood:	n/a	n/a
40	MTA3	chr4:56412795-56413862	GM12878	blood:	n/a	n/a
41	POLR2A	chr4:56411863-56413851	HUVEC	blood vessel:	n/a	n/a
42	E2F6	chr4:56412835-56413857	H1-hESC	embryonic stem cell:	n/a	chr4:56413060-56413069 chr4:56413593-56413600 chr4:56413315-56413325 chr4:56412879-56412888 chr4:56413311-56413320
43	POLR2A	chr4:56412769-56414069	U87	brain:	n/a	n/a
44	POLR2A	chr4:56411714-56413881	H1-neurons	neurons:	n/a	n/a
45	MAX	chr4:56411740-56414149	A549	lung:	n/a	n/a
46	STAT3	chr4:56413709-56413909	MCF10A-Er-Src	breast:	n/a	n/a
47	POLR2A	chr4:56411764-56414063	U87	brain:	n/a	n/a
48	POLR2A	chr4:56411805-56413928	GM19099	blood:	n/a	n/a
49	SIN3A	chr4:56411821-56413930	H1-hESC	embryonic stem cell:	n/a	chr4:56413568-56413577 chr4:56413347-56413358
50	POLR2A	chr4:56412669-56413842	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:56260988..56264413-chr4:56410743..56414640,3	K562	blood:
2	chr4:56412329..56414161-chr4:56494486..56496762,2	K562	blood:
3	chr4:56411581..56413941-chr4:57300856..57302618,2	K562	blood:
4	chr4:56275450..56278290-chr4:56412391..56414503,2	K562	blood:
5	chr4:56408119..56414507-chr4:56501105..56505595,8	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM165-1	chr4:56413279-56414056	ENSG00000272969.1

Variant related genes	Relation type
CLOCK	TF binding region
ENSG00000203615	Chromatin interaction
ENSG00000134851	Chromatin interaction
ENSG00000128050	Chromatin interaction
ENSG00000249700	Chromatin interaction
ENSG00000109255	Chromatin interaction
ENSG00000128059	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10002541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10005989	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10009593	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10016506	0.86[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10026692	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10034433	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10462035	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11133376	0.92[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs11133379	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11133382	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11133383	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11133394	0.98[ASN][1000 genomes]
rs11133404	0.94[CHB][hapmap]
rs11726609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11733864	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11735267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11931061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11935806	0.88[CHB][hapmap];0.86[CHD][hapmap]
rs11939815	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11947476	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11947623	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12499623	0.93[CHB][hapmap]
rs12512220	0.94[CHB][hapmap];0.84[CHD][hapmap]
rs12646078	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12647034	0.81[EUR][1000 genomes]
rs13102385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13121235	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13128582	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13138697	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13152650	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1522106	0.90[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1522107	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1522108	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1522110	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1522111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17085889	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1873092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap];0.96[LWK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1965467	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1980273	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2130036	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2140077	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2177127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2177129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2412646	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2412647	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2412663	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28445925	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28448438	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28463765	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28469692	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28514423	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525309	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28572116	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28582059	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28670674	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673496	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28713343	0.83[EUR][1000 genomes]
rs28790098	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2899037	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs35767091	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3736544	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3736545	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805147	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805152	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805157	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3817444	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.98[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3828481	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4371676	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4580704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs473005	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs480479	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4864998	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4865008	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4865018	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs501679	0.92[CEU][hapmap];0.83[TSI][hapmap]
rs549564	0.85[YRI][hapmap]
rs59804446	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60797008	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60992571	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62303714	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62309727	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6554286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6554292	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6810948	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6811520	0.90[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6812042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6815516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817267	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6817663	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6819660	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6824057	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6824955	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6825994	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6827359	0.94[CHB][hapmap];0.89[CHD][hapmap]
rs6829182	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6832769	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6834676	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6837710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839788	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6846427	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6850524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6851838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853192	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs726967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660054	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs7660808	0.83[EUR][1000 genomes]
rs7667849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7668147	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7670225	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7673908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7677526	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7680941	0.94[CHB][hapmap]
rs7684810	0.91[CEU][hapmap];0.93[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs819271	0.81[ASW][hapmap];0.92[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap]
rs9312662	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9312664	0.94[CHB][hapmap];0.87[CHD][hapmap];0.85[YRI][hapmap]
rs9684708	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993675	0.92[CEU][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap]
rs9997288	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9998038	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9998146	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3439567	chr4:56411220-56414568	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
5	esv3433892	chr4:56411745-56413843	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56410400-56414000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:56410800-56414200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:56410800-56414200	Active TSS	NHLF	lung
4	chr4:56411000-56414000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:56411000-56414000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr4:56411000-56414000	Active TSS	A549	lung
7	chr4:56411000-56414200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:56411000-56414200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:56411000-56414200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr4:56411000-56414400	Active TSS	Fetal Brain Female	brain
11	chr4:56411200-56414000	Active TSS	H9 Cell Line	embryonic stem cell
12	chr4:56411200-56414000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:56411200-56414000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:56411200-56414000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:56411200-56414000	Active TSS	NHDF-Ad	bronchial
16	chr4:56411200-56414400	Active TSS	Brain Germinal Matrix	brain
17	chr4:56411200-56414600	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr4:56411400-56414000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:56411400-56414000	Active TSS	Fetal Muscle Trunk	muscle
20	chr4:56411400-56414000	Active TSS	Ovary	ovary
21	chr4:56411400-56414000	Active TSS	Placenta Amnion	Placenta Amnion
22	chr4:56411400-56414000	Active TSS	Right Ventricle	heart
23	chr4:56411400-56414000	Active TSS	Stomach Smooth Muscle	stomach
24	chr4:56411400-56414000	Active TSS	HSMMtube	muscle
25	chr4:56411400-56414200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:56411400-56414200	Active TSS	Fetal Muscle Leg	muscle
27	chr4:56411400-56414200	Active TSS	Fetal Stomach	stomach
28	chr4:56411600-56414000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr4:56411600-56414000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:56411600-56414000	Active TSS	Psoas Muscle	Psoas
31	chr4:56411600-56414200	Active TSS	Aorta	Aorta
32	chr4:56411600-56414400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:56411600-56414400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:56412000-56414000	Active TSS	HepG2	liver
35	chr4:56413200-56414000	Active TSS	Right Atrium	heart
36	chr4:56413200-56414200	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr4:56413200-56415000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr4:56413400-56414000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
39	chr4:56413400-56414000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
40	chr4:56413400-56414000	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr4:56413400-56414000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:56413400-56414000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:56413400-56414000	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr4:56413400-56414000	Flanking Active TSS	Colonic Mucosa	Colon
45	chr4:56413400-56414000	Active TSS	Fetal Brain Male	brain
46	chr4:56413400-56414000	Flanking Active TSS	Placenta	Placenta
47	chr4:56413400-56414000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr4:56413400-56414200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr4:56413400-56414200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr4:56413400-56414200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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