Variant report

Variant	rs28379793
Chromosome Location	chr7:78935410-78935411
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10246925	1.00[AFR][1000 genomes]
rs10248245	0.94[AFR][1000 genomes]
rs10254566	0.94[AFR][1000 genomes]
rs10257920	1.00[AFR][1000 genomes]
rs10265495	0.94[AFR][1000 genomes]
rs10270882	1.00[AFR][1000 genomes]
rs10441342	0.83[AFR][1000 genomes]
rs28513656	0.94[AFR][1000 genomes]
rs28553964	0.94[AFR][1000 genomes]
rs28694694	0.97[AFR][1000 genomes]
rs55653170	0.97[AFR][1000 genomes]
rs58778670	0.94[AFR][1000 genomes]
rs73704120	1.00[AFR][1000 genomes]
rs73704122	0.94[AFR][1000 genomes]
rs73704148	1.00[AFR][1000 genomes]
rs73707603	0.97[AFR][1000 genomes]
rs73707609	0.97[AFR][1000 genomes]
rs954896	1.00[AFR][1000 genomes]
rs9886064	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78933400-78937000	Weak transcription	Liver	Liver
2	chr7:78934200-78935800	Weak transcription	A549	lung
3	chr7:78934200-78937600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:78935000-78936400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links