Variant report

Variant	rs28513656
Chromosome Location	chr7:78897634-78897635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10229848	1.00[ASN][1000 genomes]
rs10246925	0.94[AFR][1000 genomes]
rs10248245	0.88[AFR][1000 genomes]
rs10248259	1.00[ASN][1000 genomes]
rs10252829	1.00[ASN][1000 genomes]
rs10254141	1.00[ASN][1000 genomes]
rs10254566	0.89[AFR][1000 genomes]
rs10257920	0.94[AFR][1000 genomes]
rs10265495	0.89[AFR][1000 genomes]
rs10270882	0.94[AFR][1000 genomes]
rs11978279	1.00[ASN][1000 genomes]
rs28379793	0.94[AFR][1000 genomes]
rs28553964	0.88[AFR][1000 genomes]
rs28694694	0.97[AFR][1000 genomes]
rs55653170	0.97[AFR][1000 genomes]
rs58778670	0.89[AFR][1000 genomes]
rs73704120	0.94[AFR][1000 genomes]
rs73704122	0.89[AFR][1000 genomes]
rs73704148	0.94[AFR][1000 genomes]
rs73707603	0.97[AFR][1000 genomes]
rs73707609	0.97[AFR][1000 genomes]
rs954896	0.94[AFR][1000 genomes]
rs9886064	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv437988	chr7:78806100-78910974	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78888400-78898000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78894600-78898400	Weak transcription	NHLF	lung
3	chr7:78896600-78897800	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78896800-78898400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr7:78896800-78899200	Weak transcription	Ovary	ovary
6	chr7:78896800-78911600	Weak transcription	Aorta	Aorta
7	chr7:78897400-78897800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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