Variant report

Variant	rs28553964
Chromosome Location	chr7:78955435-78955436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:28170954..28172471-chr7:78954883..78956578,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10246925	0.94[AFR][1000 genomes]
rs10248245	1.00[AFR][1000 genomes]
rs10254566	0.89[AFR][1000 genomes]
rs10257920	0.94[AFR][1000 genomes]
rs10258316	0.83[AFR][1000 genomes]
rs10264527	0.80[AFR][1000 genomes]
rs10265495	0.89[AFR][1000 genomes]
rs10270882	0.94[AFR][1000 genomes]
rs10441342	0.88[AFR][1000 genomes]
rs28379793	0.94[AFR][1000 genomes]
rs28513656	0.88[AFR][1000 genomes]
rs28533601	0.83[AFR][1000 genomes]
rs28538773	0.83[AFR][1000 genomes]
rs28694694	0.91[AFR][1000 genomes]
rs55653170	0.91[AFR][1000 genomes]
rs58778670	0.89[AFR][1000 genomes]
rs73704120	0.94[AFR][1000 genomes]
rs73704122	0.89[AFR][1000 genomes]
rs73704148	0.94[AFR][1000 genomes]
rs73704180	0.83[AFR][1000 genomes]
rs73707603	0.91[AFR][1000 genomes]
rs73707609	0.91[AFR][1000 genomes]
rs7776852	0.83[AFR][1000 genomes]
rs7791778	0.83[AFR][1000 genomes]
rs954896	0.94[AFR][1000 genomes]
rs9655826	0.83[AFR][1000 genomes]
rs9886064	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78947400-78956600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78955400-78958800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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