Variant report

Variant	rs7776852
Chromosome Location	chr7:78971362-78971363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10248245	0.83[AFR][1000 genomes]
rs10254141	0.86[YRI][hapmap]
rs10257920	1.00[YRI][hapmap]
rs10258316	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10264527	0.93[YRI][hapmap];0.97[AFR][1000 genomes]
rs10273381	0.81[YRI][hapmap]
rs10276081	0.81[YRI][hapmap]
rs10278164	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10441342	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs28533601	1.00[AFR][1000 genomes]
rs28538773	1.00[AFR][1000 genomes]
rs28553964	0.83[AFR][1000 genomes]
rs6957328	0.81[YRI][hapmap]
rs73704180	1.00[AFR][1000 genomes]
rs7791778	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs954896	1.00[YRI][hapmap]
rs9655826	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9886064	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2762681	chr7:78958864-78982993	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78967600-78979600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78967800-78971400	Weak transcription	Brain Anterior Caudate	brain
3	chr7:78967800-78975800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:78970800-78971800	Enhancers	Brain Hippocampus Middle	brain
5	chr7:78971000-78971800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr7:78971200-78971800	Enhancers	Brain Angular Gyrus	brain
7	chr7:78971200-78972000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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