Variant report

Variant	rs7791778
Chromosome Location	chr7:78966918-78966919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10248245	0.83[AFR][1000 genomes]
rs10254141	0.82[YRI][hapmap]
rs10257920	1.00[YRI][hapmap]
rs10258316	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10264527	0.90[YRI][hapmap];0.97[AFR][1000 genomes]
rs10278164	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10441342	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs28533601	1.00[AFR][1000 genomes]
rs28538773	1.00[AFR][1000 genomes]
rs28553964	0.83[AFR][1000 genomes]
rs73704180	1.00[AFR][1000 genomes]
rs7776852	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs954896	1.00[YRI][hapmap]
rs9655826	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9886064	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2762681	chr7:78958864-78982993	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78961800-78969200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:78966000-78967000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr7:78966200-78967000	Enhancers	Brain Substantia Nigra	brain
4	chr7:78966200-78967200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:78966200-78967200	Enhancers	Fetal Heart	heart
6	chr7:78966600-78967000	Enhancers	Brain Angular Gyrus	brain
7	chr7:78966600-78967000	Enhancers	Brain Anterior Caudate	brain
8	chr7:78966600-78967600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:78966600-78967800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:78966800-78967000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:78966800-78967000	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:78966800-78967000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr7:78966800-78967200	Flanking Active TSS	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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