Variant report

Variant	rs28396849
Chromosome Location	chr14:69457086-69457087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69366379..69368743-chr14:69454832..69457651,2	MCF-7	breast:
2	chr14:69446981..69449965-chr14:69456787..69458702,2	K562	blood:
3	chr14:69443728..69448549-chr14:69453404..69457507,10	MCF-7	breast:
4	chr14:69381386..69384151-chr14:69454672..69457482,2	MCF-7	breast:
5	chr14:69454329..69457831-chr14:69459163..69461306,3	MCF-7	breast:
6	chr14:69442613..69444498-chr14:69453926..69457303,3	MCF-7	breast:
7	chr14:69453762..69456059-chr14:69456066..69458311,2	MCF-7	breast:
8	chr14:69443689..69446284-chr14:69456900..69459106,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10129558	0.85[ASN][1000 genomes]
rs10143111	0.94[AFR][1000 genomes]
rs10144056	0.97[ASN][1000 genomes]
rs10148688	0.80[ASN][1000 genomes]
rs2284906	0.97[ASN][1000 genomes]
rs242104	0.97[ASN][1000 genomes]
rs242109	0.81[ASN][1000 genomes]
rs28561965	0.83[AFR][1000 genomes]
rs28698682	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58860097	0.97[ASN][1000 genomes]
rs8009158	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69449200-69458400	Weak transcription	HUVEC	blood vessel
3	chr14:69453400-69460600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr14:69454800-69457400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:69454800-69461200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:69455600-69465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:69456000-69464400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:69456000-69471200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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