Variant report

Variant	rs10129558
Chromosome Location	chr14:69485509-69485510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10135626	0.91[ASN][1000 genomes]
rs10136273	0.84[ASN][1000 genomes]
rs10142364	0.84[ASN][1000 genomes]
rs10144056	0.88[ASN][1000 genomes]
rs10148688	0.89[ASN][1000 genomes]
rs2284906	0.88[ASN][1000 genomes]
rs242104	0.82[ASN][1000 genomes]
rs28396849	0.85[ASN][1000 genomes]
rs28535566	0.81[ASN][1000 genomes]
rs28698682	0.85[ASN][1000 genomes]
rs3861669	0.84[ASN][1000 genomes]
rs58860097	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3396707	chr14:69483424-69485972	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3449205	chr14:69483749-69485647	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69481000-69486000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69483200-69485600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:69484800-69485600	Enhancers	K562	blood
5	chr14:69485000-69486200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:69485200-69485600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr14:69485400-69485800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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