Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69480474..69483155-chr14:69487373..69489941,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1007407	1.00[JPT][hapmap]
rs10083451	0.82[JPT][hapmap]
rs10129558	0.84[ASN][1000 genomes]
rs10130013	1.00[JPT][hapmap]
rs10132533	1.00[JPT][hapmap]
rs10135626	0.94[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10136273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139873	0.82[JPT][hapmap]
rs10142364	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143302	1.00[JPT][hapmap]
rs10145565	0.82[JPT][hapmap]
rs10146339	1.00[JPT][hapmap]
rs10147369	1.00[JPT][hapmap]
rs10149232	1.00[JPT][hapmap]
rs11158782	0.82[JPT][hapmap]
rs11158787	1.00[JPT][hapmap]
rs11158790	0.82[JPT][hapmap]
rs11158795	1.00[JPT][hapmap]
rs1147481	0.82[JPT][hapmap]
rs11622889	1.00[JPT][hapmap]
rs11628126	1.00[JPT][hapmap]
rs12431846	1.00[JPT][hapmap]
rs12434775	1.00[JPT][hapmap]
rs12435594	1.00[JPT][hapmap]
rs12589028	0.82[JPT][hapmap]
rs1275407	0.82[JPT][hapmap]
rs1275415	1.00[JPT][hapmap]
rs12879406	1.00[JPT][hapmap]
rs1892297	1.00[JPT][hapmap]
rs1914004	1.00[JPT][hapmap]
rs2001998	0.82[JPT][hapmap]
rs2012764	1.00[JPT][hapmap]
rs2056153	1.00[JPT][hapmap]
rs2300875	1.00[JPT][hapmap]
rs242109	0.88[CHB][hapmap];0.93[CHD][hapmap]
rs28535566	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28613298	0.82[JPT][hapmap]
rs6573869	0.82[JPT][hapmap]
rs7160629	0.82[JPT][hapmap]
rs73275566	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8008184	1.00[JPT][hapmap]
rs9323524	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3861669	RAD51L1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69486000-69503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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