Variant report

Variant	rs28402247
Chromosome Location	chr7:103648163-103648164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10224925	0.82[EUR][1000 genomes]
rs10228745	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10229780	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10234191	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158113	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17158137	0.81[EUR][1000 genomes]
rs2027972	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61244293	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6465955	0.81[EUR][1000 genomes]
rs6465956	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6465957	0.81[EUR][1000 genomes]
rs7456498	0.85[ASN][1000 genomes]
rs7781650	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7799089	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103646000-103650400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:103647600-103650200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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