Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:103649604..103651650-chr7:103686629..103688588,2	K562	blood:
2	chr7:103649399..103652375-chr7:103652385..103654940,3	K562	blood:
3	chr7:103564555..103566285-chr7:103650093..103652730,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10216187	0.99[ASN][1000 genomes]
rs10216198	0.99[ASN][1000 genomes]
rs10224925	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230068	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273035	1.00[ASN][1000 genomes]
rs10487182	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11971265	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12056044	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17158113	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158137	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158144	1.00[ASN][1000 genomes]
rs17158288	0.98[ASN][1000 genomes]
rs28402247	0.81[EUR][1000 genomes]
rs55825925	0.98[ASN][1000 genomes]
rs56272143	0.96[ASN][1000 genomes]
rs60375583	0.98[ASN][1000 genomes]
rs6465956	0.82[EUR][1000 genomes]
rs6465957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71154387	0.94[ASN][1000 genomes]
rs73409925	0.98[ASN][1000 genomes]
rs73409927	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6465955	LRCH4	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103650400-103651400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:103651200-103652000	Enhancers	HepG2	liver

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