Variant report
| Variant | rs6465957 |
|---|---|
| Chromosome Location | chr7:103651439-103651440 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10216187 | 0.99[ASN][1000 genomes] |
| rs10216198 | 0.99[ASN][1000 genomes] |
| rs10224925 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10230068 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10273035 | 1.00[ASN][1000 genomes] |
| rs10487182 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11971265 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12056044 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17158113 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17158137 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17158144 | 1.00[ASN][1000 genomes] |
| rs17158288 | 0.98[ASN][1000 genomes] |
| rs28402247 | 0.81[EUR][1000 genomes] |
| rs55825925 | 0.98[ASN][1000 genomes] |
| rs56272143 | 0.96[ASN][1000 genomes] |
| rs60375583 | 0.98[ASN][1000 genomes] |
| rs6465955 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6465956 | 0.82[EUR][1000 genomes] |
| rs71154387 | 0.94[ASN][1000 genomes] |
| rs73409925 | 0.98[ASN][1000 genomes] |
| rs73409927 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888924 | chr7:103637906-103706936 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6465957 | BCAP29 | cis | parietal | SCAN |
| rs6465957 | LRCH4 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103651200-103652000 | Enhancers | HepG2 | liver |
