Variant report

Variant	rs11971265
Chromosome Location	chr7:103657547-103657548
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103648042..103650999-chr7:103656412..103659096,2	K562	blood:
2	chr7:103656541..103658129-chr7:103668696..103670747,2	K562	blood:
3	chr7:103657443..103659638-chr7:103669864..103671987,2	K562	blood:
4	chr7:103628980..103630877-chr7:103656452..103658891,2	K562	blood:

Variant related genes	Relation type
ENSG00000189056	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10216187	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10216198	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10224925	1.00[ASN][1000 genomes]
rs10230068	1.00[ASN][1000 genomes]
rs10273035	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11972170	0.83[EUR][1000 genomes]
rs12056044	0.88[ASN][1000 genomes]
rs17158113	1.00[ASN][1000 genomes]
rs17158137	1.00[ASN][1000 genomes]
rs17158144	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158288	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55825925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56272143	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56334899	0.83[EUR][1000 genomes]
rs60375583	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6465955	1.00[ASN][1000 genomes]
rs6465957	1.00[ASN][1000 genomes]
rs71154387	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73405684	0.83[EUR][1000 genomes]
rs73405688	0.83[EUR][1000 genomes]
rs73405690	0.83[EUR][1000 genomes]
rs73405692	0.83[EUR][1000 genomes]
rs73409925	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73409927	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888924	chr7:103637906-103706936	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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