Variant report
| Variant | rs12056044 |
|---|---|
| Chromosome Location | chr7:103671827-103671828 |
| allele | C/T |
| Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
| rs_ID | r2[population] |
|---|---|
| rs10216187 | 0.89[ASN][1000 genomes] |
| rs10216198 | 0.89[ASN][1000 genomes] |
| rs10224925 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10230068 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10273035 | 0.88[ASN][1000 genomes] |
| rs10487182 | 0.85[ASN][1000 genomes] |
| rs11971265 | 0.88[ASN][1000 genomes] |
| rs17158113 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17158137 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17158144 | 0.88[ASN][1000 genomes] |
| rs17158288 | 0.90[ASN][1000 genomes] |
| rs55825925 | 0.90[ASN][1000 genomes] |
| rs56272143 | 0.88[ASN][1000 genomes] |
| rs60375583 | 0.90[ASN][1000 genomes] |
| rs61244293 | 0.80[EUR][1000 genomes] |
| rs6465955 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6465957 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs71154387 | 0.84[ASN][1000 genomes] |
| rs73409925 | 0.90[ASN][1000 genomes] |
| rs73409927 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888924 | chr7:103637906-103706936 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018253 | chr7:103669491-103731850 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103671800-103672200 | Enhancers | Brain Substantia Nigra | brain |





