Variant report
| Variant | rs73409927 |
|---|---|
| Chromosome Location | chr7:103667914-103667915 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103517390..103519695-chr7:103666602..103669150,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10216187 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10216198 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10224925 | 0.96[ASN][1000 genomes] |
| rs10230068 | 0.96[ASN][1000 genomes] |
| rs10273035 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10487182 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11971265 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11972170 | 0.83[EUR][1000 genomes] |
| rs12056044 | 0.88[ASN][1000 genomes] |
| rs17158113 | 0.96[ASN][1000 genomes] |
| rs17158137 | 0.96[ASN][1000 genomes] |
| rs17158144 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17158288 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55825925 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56272143 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56334899 | 0.83[EUR][1000 genomes] |
| rs60375583 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6465955 | 0.96[ASN][1000 genomes] |
| rs6465957 | 0.96[ASN][1000 genomes] |
| rs71154387 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73405684 | 0.83[EUR][1000 genomes] |
| rs73405688 | 0.83[EUR][1000 genomes] |
| rs73405690 | 0.83[EUR][1000 genomes] |
| rs73405692 | 0.83[EUR][1000 genomes] |
| rs73409925 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888924 | chr7:103637906-103706936 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103667200-103668200 | Weak transcription | HepG2 | liver |
