Variant report

Variant	rs28402830
Chromosome Location	chr4:15400323-15400324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10033033	0.85[AFR][1000 genomes]
rs16891806	1.00[AMR][1000 genomes]
rs16891831	1.00[AMR][1000 genomes]
rs28493206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578650	1.00[AMR][1000 genomes]
rs28583158	1.00[AMR][1000 genomes]
rs28712663	1.00[AMR][1000 genomes]
rs28778886	1.00[AMR][1000 genomes]
rs9998617	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15378600-15401200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15384400-15402000	Weak transcription	Fetal Lung	lung
3	chr4:15388400-15401800	Weak transcription	Fetal Stomach	stomach
4	chr4:15394400-15401600	Weak transcription	HSMMtube	muscle
5	chr4:15394400-15402400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:15397000-15402200	Weak transcription	Right Atrium	heart
7	chr4:15397600-15400600	Weak transcription	Fetal Kidney	kidney
8	chr4:15398000-15400400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:15398000-15401400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:15398000-15402200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:15398200-15401800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:15399000-15400400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:15399000-15402200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:15399000-15402400	Enhancers	Hela-S3	cervix
15	chr4:15399000-15405200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr4:15399200-15401200	Enhancers	HMEC	breast
17	chr4:15399200-15402400	Enhancers	NHEK	skin
18	chr4:15399400-15400400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:15399400-15400400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:15399400-15400800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:15399600-15400800	Enhancers	Aorta	Aorta
22	chr4:15399600-15402200	Enhancers	Stomach Smooth Muscle	stomach
23	chr4:15399800-15400400	Enhancers	Osteobl	bone
24	chr4:15399800-15400600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:15399800-15401000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:15400000-15400400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:15400000-15400400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr4:15400000-15400600	Enhancers	Lung	lung
29	chr4:15400000-15401000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:15400000-15401000	Enhancers	Esophagus	oesophagus
31	chr4:15400000-15402400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:15400000-15402400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:15400000-15402800	Enhancers	Colon Smooth Muscle	Colon
34	chr4:15400000-15405400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr4:15400200-15400600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr4:15400200-15400600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:15400200-15400800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr4:15400200-15400800	Enhancers	Adipose Nuclei	Adipose
39	chr4:15400200-15401200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr4:15400200-15401400	Weak transcription	NHLF	lung
41	chr4:15400200-15402000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr4:15400200-15402000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr4:15400200-15402000	Weak transcription	NHDF-Ad	bronchial
44	chr4:15400200-15402200	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr4:15400200-15402800	Enhancers	Primary T cells from cord blood	blood
46	chr4:15400200-15403200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:15400200-15403200	Enhancers	Ovary	ovary
48	chr4:15400200-15403400	Enhancers	Primary B cells from peripheral blood	blood
49	chr4:15400200-15405000	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links