Variant report

Variant	rs10033033
Chromosome Location	chr4:15408377-15408378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10003299	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020649	1.00[AMR][1000 genomes]
rs10022438	1.00[AMR][1000 genomes]
rs10026118	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28390359	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28402830	0.85[AFR][1000 genomes]
rs28463577	1.00[AMR][1000 genomes]
rs28493206	0.80[AFR][1000 genomes]
rs28678008	1.00[AMR][1000 genomes]
rs58280839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15403200-15411200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:15403200-15411200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:15403200-15412400	Weak transcription	Thymus	Thymus
4	chr4:15403600-15411200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:15403800-15411600	Weak transcription	Fetal Thymus	thymus
6	chr4:15404000-15411400	Weak transcription	Fetal Lung	lung
7	chr4:15404000-15414800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:15404000-15415600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:15404200-15411400	Weak transcription	Dnd41	blood
10	chr4:15405200-15408400	Weak transcription	Fetal Stomach	stomach
11	chr4:15405200-15411600	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:15405200-15412200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:15405400-15410400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:15405400-15411600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:15405400-15416000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:15405400-15422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:15406400-15414800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:15406600-15409200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr4:15406600-15411400	Weak transcription	Primary T cells from cord blood	blood
20	chr4:15406600-15412200	Weak transcription	NHDF-Ad	bronchial
21	chr4:15406800-15412200	Weak transcription	NHLF	lung
22	chr4:15407000-15412400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:15407600-15411200	Weak transcription	Aorta	Aorta
24	chr4:15407600-15411400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:15407600-15418000	Weak transcription	Left Ventricle	heart
26	chr4:15407800-15408400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr4:15407800-15411200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:15408000-15410400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr4:15408000-15411600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:15408200-15409400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr4:15408200-15411000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:15408200-15411200	Weak transcription	Primary B cells from cord blood	blood
33	chr4:15408200-15411200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:15408200-15413000	Weak transcription	Spleen	Spleen

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