Variant report

Variant	rs10026118
Chromosome Location	chr4:15422287-15422288
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr4:15422218-15422401	H1-hESC	embryonic stem cell:	n/a	n/a
2	USF1	chr4:15422210-15422418	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000251379	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10003299	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020649	1.00[AMR][1000 genomes]
rs10022438	0.86[ASW][hapmap];0.86[MKK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10033033	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1861050	0.85[MKK][hapmap]
rs28390359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28463577	1.00[AMR][1000 genomes]
rs28678008	1.00[AMR][1000 genomes]
rs58280839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
2	chr4:15418000-15423200	Enhancers	Ovary	ovary
3	chr4:15418200-15423200	Enhancers	Colon Smooth Muscle	Colon
4	chr4:15418400-15422600	Weak transcription	Right Atrium	heart
5	chr4:15419000-15428600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:15419800-15428600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:15420000-15422800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:15420800-15428800	Weak transcription	Fetal Stomach	stomach
9	chr4:15421400-15423800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:15421600-15422600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:15421600-15423200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:15421800-15422400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:15421800-15422600	Enhancers	NHLF	lung
14	chr4:15421800-15422800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:15421800-15422800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:15421800-15422800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:15421800-15422800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:15421800-15422800	Enhancers	Osteobl	bone
19	chr4:15421800-15423000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:15421800-15423000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:15421800-15423000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:15421800-15423000	Enhancers	Brain Anterior Caudate	brain
23	chr4:15421800-15423000	Enhancers	HSMM	muscle
24	chr4:15421800-15423200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr4:15421800-15423200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:15421800-15423200	Enhancers	Brain Cingulate Gyrus	brain
27	chr4:15421800-15423200	Enhancers	Brain Hippocampus Middle	brain
28	chr4:15421800-15423200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr4:15421800-15423200	Enhancers	Stomach Smooth Muscle	stomach
30	chr4:15422000-15422400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:15422000-15422400	Weak transcription	Aorta	Aorta
32	chr4:15422000-15422400	Enhancers	Brain Substantia Nigra	brain
33	chr4:15422000-15422400	Enhancers	NH-A	brain
34	chr4:15422000-15422800	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr4:15422000-15422800	Enhancers	Brain Angular Gyrus	brain
36	chr4:15422000-15423000	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr4:15422000-15423200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:15422000-15423200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:15422000-15423200	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr4:15422000-15423200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:15422000-15423200	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr4:15422000-15423200	Enhancers	HSMMtube	muscle
43	chr4:15422200-15422600	Enhancers	H9 Cell Line	embryonic stem cell
44	chr4:15422200-15422800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links