Variant report

Variant	rs28678008
Chromosome Location	chr4:15433189-15433190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10003299	1.00[AMR][1000 genomes]
rs10020649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026118	1.00[AMR][1000 genomes]
rs10033033	1.00[AMR][1000 genomes]
rs28390359	1.00[AMR][1000 genomes]
rs28463577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58280839	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15428800-15435400	Weak transcription	NHEK	skin
2	chr4:15429800-15435200	Weak transcription	Osteobl	bone
3	chr4:15430000-15435000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:15430400-15435000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:15430600-15435000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:15430800-15435000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:15430800-15436200	Weak transcription	Brain Germinal Matrix	brain
8	chr4:15430800-15437000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:15430800-15437400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:15431400-15435200	Weak transcription	Adipose Nuclei	Adipose
11	chr4:15431400-15436200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:15431400-15437800	Weak transcription	Ovary	ovary
13	chr4:15431400-15443800	Weak transcription	Aorta	Aorta
14	chr4:15432800-15433800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:15433000-15433800	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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