Variant report

Variant	rs58280839
Chromosome Location	chr4:15447859-15447860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10003299	1.00[AMR][1000 genomes]
rs10020649	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026118	1.00[AMR][1000 genomes]
rs10033033	1.00[AMR][1000 genomes]
rs28390359	1.00[AMR][1000 genomes]
rs28463577	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28678008	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438200-15452400	Weak transcription	Left Ventricle	heart
2	chr4:15438200-15452600	Weak transcription	Fetal Kidney	kidney
3	chr4:15438400-15458800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:15438800-15453000	Weak transcription	Fetal Lung	lung
5	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:15443800-15452000	Weak transcription	Primary B cells from cord blood	blood
7	chr4:15444200-15452400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:15444400-15452400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:15444400-15452400	Weak transcription	Fetal Stomach	stomach
10	chr4:15445600-15452200	Weak transcription	Aorta	Aorta
11	chr4:15446200-15452400	Weak transcription	Ovary	ovary
12	chr4:15446600-15452400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:15446800-15448000	Weak transcription	Primary T cells from cord blood	blood
14	chr4:15447000-15451800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:15447000-15452400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:15447000-15452400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:15447200-15452000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:15447600-15452400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:15447800-15452800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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