Variant report

Variant	rs28405929
Chromosome Location	chr9:6682704-6682705
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:6679508..6683848-chr9:6755336..6760985,13	K562	blood:
2	chr9:6638714..6640466-chr9:6681026..6683863,2	MCF-7	breast:
3	chr9:6680768..6683764-chr9:6756005..6759658,4	MCF-7	breast:
4	chr9:6681451..6683371-chr9:6705864..6707945,2	MCF-7	breast:
5	chr9:6663029..6667664-chr9:6679639..6683357,9	MCF-7	breast:
6	chr9:6679734..6682958-chr9:6730915..6733550,3	MCF-7	breast:
7	chr9:6642994..6646042-chr9:6680317..6683201,5	MCF-7	breast:
8	chr9:6412059..6414733-chr9:6680071..6683116,4	K562	blood:
9	chr9:6679611..6682734-chr9:6683304..6686457,4	MCF-7	breast:
10	chr9:6615911..6617907-chr9:6681150..6682978,2	MCF-7	breast:
11	chr9:6682207..6684667-chr9:6707689..6709841,2	K562	blood:
12	chr9:6680134..6683245-chr9:6684622..6687341,3	K562	blood:
13	chr9:6671740..6675372-chr9:6679558..6683814,6	MCF-7	breast:
14	chr9:6645871..6648933-chr9:6680309..6682972,3	MCF-7	breast:
15	chr9:6681423..6683704-chr9:6710640..6713020,2	MCF-7	breast:
16	chr9:6674752..6678702-chr9:6679022..6682873,7	K562	blood:
17	chr9:6674523..6677794-chr9:6679022..6682789,5	K562	blood:
18	chr9:6639721..6642651-chr9:6680043..6682884,2	MCF-7	breast:
19	chr9:6680087..6683627-chr9:6714158..6717601,7	MCF-7	breast:
20	chr9:6533272..6535800-chr9:6681069..6683891,2	K562	blood:
21	chr17:57916861..57918558-chr9:6681283..6683032,2	MCF-7	breast:
22	chr9:6680773..6682962-chr9:6702713..6705458,5	MCF-7	breast:
23	chr9:6680283..6682960-chr9:6684797..6686808,2	MCF-7	breast:
24	chr9:6661026..6667542-chr9:6678514..6683695,9	MCF-7	breast:
25	chr9:6680669..6682912-chr9:6702581..6705387,2	MCF-7	breast:
26	chr9:6681473..6683386-chr9:6714578..6718490,5	MCF-7	breast:
27	chr9:6680639..6682955-chr9:6686831..6689135,2	MCF-7	breast:
28	chr9:6679678..6684692-chr9:6754924..6762822,14	K562	blood:

No data

Variant related genes	Relation type
ENSG00000229057	Chromatin interaction
ENSG00000147854	Chromatin interaction
ENSG00000229611	Chromatin interaction
ENSG00000178445	Chromatin interaction
ENSG00000232946	Chromatin interaction
ENSG00000266863	Chromatin interaction
ENSG00000206147	Chromatin interaction
ENSG00000236924	Chromatin interaction
ENSG00000107077	Chromatin interaction
ENSG00000225489	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10114670	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10114673	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10117715	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10118480	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10120666	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10815462	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10975728	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10975729	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10975730	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10975732	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10975735	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10975736	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10975743	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12339034	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12342739	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12342769	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12343778	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12346874	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12347920	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12347930	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28433428	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34028852	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57860869	0.85[EUR][1000 genomes]
rs59353289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60188812	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7853359	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7858726	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7866717	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7871969	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv831498	chr9:6496021-6689728	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	esv2752308	chr9:6523060-6899149	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
6	nsv613206	chr9:6525753-6686738	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	esv3324686	chr9:6528411-6728310	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
8	nsv1028402	chr9:6542253-6874231	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
9	nsv1018308	chr9:6544766-6869653	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
10	nsv1015462	chr9:6544766-6874231	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
11	nsv1018870	chr9:6548393-6708345	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
12	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
13	nsv1016600	chr9:6566610-6695986	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
14	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
15	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
16	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
17	nsv1029929	chr9:6573752-6852349	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
18	nsv539969	chr9:6573752-6852349	Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
19	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
20	nsv1034936	chr9:6575976-6708345	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
21	esv2758626	chr9:6576991-6838660	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
22	esv2759661	chr9:6576991-6845561	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
23	nsv1031417	chr9:6584138-6823129	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
24	nsv539970	chr9:6584138-6823129	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
25	nsv892165	chr9:6602821-6701530	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
26	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
27	nsv1018415	chr9:6605417-6723788	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
28	nsv1021933	chr9:6605417-6824468	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
29	nsv1018845	chr9:6609578-6829592	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
30	nsv1023706	chr9:6619819-6745551	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
31	nsv519777	chr9:6620059-6750556	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
32	nsv613209	chr9:6620059-6750556	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
33	nsv1021304	chr9:6630626-6767080	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
34	nsv1033323	chr9:6630626-6824468	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
35	nsv613210	chr9:6635045-6750556	Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
36	nsv892167	chr9:6641895-6701530	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
37	nsv892168	chr9:6641895-6703997	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
38	nsv892169	chr9:6641895-6715730	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
39	nsv892170	chr9:6641895-6723861	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
40	nsv892171	chr9:6648607-6703997	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
41	nsv1028863	chr9:6656619-6725007	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
42	nsv892172	chr9:6656630-6695397	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
43	nsv1022370	chr9:6663786-6682871	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
44	nsv1034003	chr9:6663786-6745551	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
45	nsv613211	chr9:6664282-6706693	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
46	nsv1030278	chr9:6669375-6741529	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
47	nsv892173	chr9:6669474-6760919	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
48	nsv466112	chr9:6669474-6786734	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
49	nsv613212	chr9:6669474-6786734	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
50	esv2752309	chr9:6670448-6908200	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6680000-6682800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:6680200-6682800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:6680400-6682800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr9:6680400-6682800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:6680400-6682800	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr9:6680400-6682800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:6680400-6682800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:6680400-6682800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:6680400-6682800	Active TSS	Brain Angular Gyrus	brain
10	chr9:6680400-6682800	Active TSS	NHLF	lung
11	chr9:6680400-6683000	Active TSS	H1 Cell Line	embryonic stem cell
12	chr9:6680400-6683000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:6680400-6683000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr9:6680400-6683200	Active TSS	NHDF-Ad	bronchial
15	chr9:6680400-6683400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:6680600-6682800	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr9:6680600-6682800	Active TSS	HSMM	muscle
18	chr9:6680600-6683200	Active TSS	A549	lung
19	chr9:6680800-6682800	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr9:6680800-6682800	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr9:6680800-6682800	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr9:6680800-6682800	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr9:6680800-6683200	Active TSS	K562	blood
24	chr9:6681000-6682800	Active TSS	Colonic Mucosa	Colon
25	chr9:6681000-6682800	Active TSS	HMEC	breast
26	chr9:6681000-6683000	Active TSS	Placenta	Placenta
27	chr9:6681000-6683200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:6681000-6683400	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr9:6681000-6683400	Active TSS	GM12878-XiMat	blood
30	chr9:6681200-6682800	Active TSS	Rectal Mucosa Donor 31	rectum
31	chr9:6681200-6682800	Active TSS	NH-A	brain
32	chr9:6681800-6683000	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr9:6682000-6683000	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr9:6682200-6682800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr9:6682200-6682800	Flanking Active TSS	Fetal Brain Female	brain
36	chr9:6682200-6683200	Active TSS	HepG2	liver
37	chr9:6682400-6682800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:6682400-6682800	Enhancers	Primary hematopoietic stem cells	blood
39	chr9:6682400-6682800	Flanking Active TSS	Liver	Liver
40	chr9:6682400-6682800	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr9:6682400-6682800	Enhancers	Left Ventricle	heart
42	chr9:6682400-6682800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr9:6682400-6682800	Enhancers	Right Atrium	heart
44	chr9:6682400-6682800	Active TSS	Stomach Smooth Muscle	stomach
45	chr9:6682400-6682800	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr9:6682400-6683000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr9:6682400-6683000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:6682400-6683200	Weak transcription	Fetal Lung	lung
49	chr9:6682400-6683400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:6682400-6683400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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