Variant report

Variant	rs28407451
Chromosome Location	chr14:77655830-77655831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10141427	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10162402	1.00[EUR][1000 genomes]
rs11845206	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1467010	0.92[ASN][1000 genomes]
rs1508299	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28637622	1.00[EUR][1000 genomes]
rs61151420	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574357	1.00[EUR][1000 genomes]
rs7155385	1.00[EUR][1000 genomes]
rs7156483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160791	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77651800-77659000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr14:77653600-77662000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:77654000-77665200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:77654000-77666800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:77654000-77670000	Weak transcription	Brain Angular Gyrus	brain
6	chr14:77654200-77661800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
8	chr14:77654400-77656000	Weak transcription	Lung	lung
9	chr14:77654400-77659000	Weak transcription	Fetal Brain Male	brain
10	chr14:77654600-77659600	Weak transcription	Fetal Brain Female	brain
11	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:77654800-77656200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr14:77655000-77664400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr14:77655800-77656000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:77655800-77656200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:77655800-77656200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr14:77655800-77656200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:77655800-77657400	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links