Variant report

Variant	rs1467010
Chromosome Location	chr14:77666133-77666134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10141427	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10143567	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11845206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28407451	0.92[ASN][1000 genomes]
rs61151420	0.92[ASN][1000 genomes]
rs7156483	1.00[CHB][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654000-77666800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:77654000-77670000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
4	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:77657400-77667400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:77662000-77674400	Weak transcription	Brain Substantia Nigra	brain
7	chr14:77662400-77669800	Weak transcription	Brain Anterior Caudate	brain
8	chr14:77662400-77669800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:77662800-77669800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:77662800-77671600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:77663800-77668600	Weak transcription	Fetal Intestine Small	intestine
12	chr14:77664200-77667400	Enhancers	Fetal Brain Male	brain
13	chr14:77664800-77666400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:77666000-77666400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:77666000-77666400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr14:77666000-77666600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:77666000-77667600	Strong transcription	Fetal Brain Female	brain
18	chr14:77666000-77670200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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