Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:121484532..121485202-chr14:77672954..77673851,2	MCF-7	breast:
2	chr14:77672224..77674882-chr14:77679223..77681930,2	K562	blood:
3	chr14:77673616..77675878-chr14:77786055..77788769,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100577	Chromatin interaction
ENSG00000009830	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11845206	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1467010	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1504522	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1508299	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17750140	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2287380	1.00[CHB][hapmap]
rs2540887	1.00[CHB][hapmap]
rs2540895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2655976	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs374227	1.00[CHB][hapmap]
rs376645	1.00[CHB][hapmap]
rs380489	1.00[CHB][hapmap]
rs382670	1.00[CHB][hapmap]
rs382868	1.00[CHB][hapmap]
rs384204	1.00[CHB][hapmap]
rs396750	1.00[CHB][hapmap]
rs419630	1.00[CHB][hapmap]
rs428868	1.00[CHB][hapmap]
rs451303	1.00[CHB][hapmap]
rs727921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8010477	1.00[CHB][hapmap]
rs905734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:77662000-77674400	Weak transcription	Brain Substantia Nigra	brain
4	chr14:77670800-77675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:77671000-77679200	Weak transcription	Brain Germinal Matrix	brain
6	chr14:77671000-77685200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:77671000-77686200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:77671200-77674600	Weak transcription	Fetal Brain Male	brain
9	chr14:77671200-77678600	Weak transcription	Fetal Brain Female	brain
10	chr14:77671200-77679600	Weak transcription	Brain Angular Gyrus	brain
11	chr14:77672200-77676800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:77672400-77674600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:77672800-77674600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr14:77673600-77674600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:77673600-77674600	Weak transcription	Brain Anterior Caudate	brain
16	chr14:77673600-77683400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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