Variant report

Variant	rs8010477
Chromosome Location	chr14:77704974-77704975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77704827..77706771-chr14:77719324..77721062,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10143567	1.00[CHB][hapmap]
rs1504522	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs17750140	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs2021536	1.00[AFR][1000 genomes]
rs2287380	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2540885	0.91[ASN][1000 genomes]
rs2540887	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2540895	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs2540901	0.91[CEU][hapmap]
rs2655976	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs35069088	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35602650	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs367095	1.00[AFR][1000 genomes]
rs370110	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs370853	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs374227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs376645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs380489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs381580	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs382670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs382868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs384204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs386266	0.85[ASN][1000 genomes]
rs386913	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs391944	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs392548	0.88[EUR][1000 genomes]
rs396750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs398269	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs403602	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs404418	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs406472	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs408089	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs411965	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs412737	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs413481	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs414513	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs419630	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs419869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs420661	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs423656	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs428599	0.88[ASN][1000 genomes]
rs428601	0.88[ASN][1000 genomes]
rs428868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs428908	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs429008	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs440094	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs451303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4903561	1.00[CEU][hapmap]
rs71413450	1.00[AFR][1000 genomes]
rs727921	1.00[CHB][hapmap]
rs750932	1.00[CEU][hapmap]
rs905734	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs905735	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8010477	TMEM63C	cis	Whole Blood	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77686400-77712400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:77692800-77712400	Weak transcription	Fetal Intestine Small	intestine
4	chr14:77693000-77705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:77697600-77726800	Weak transcription	Brain Substantia Nigra	brain
6	chr14:77698400-77720000	Weak transcription	Pancreas	Pancrea
7	chr14:77698600-77705000	Weak transcription	Brain Germinal Matrix	brain
8	chr14:77700000-77706000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:77700400-77705800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:77700600-77705400	Weak transcription	Fetal Brain Female	brain
11	chr14:77701400-77708400	Weak transcription	Brain Angular Gyrus	brain
12	chr14:77701600-77710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:77704400-77705200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:77704600-77705800	Strong transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:77704800-77705600	Enhancers	Brain Anterior Caudate	brain
16	chr14:77704800-77719200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links