Variant report

Variant	rs2021536
Chromosome Location	chr14:77655349-77655350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1504522	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17750140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2287380	1.00[AFR][1000 genomes]
rs2540893	0.89[AMR][1000 genomes]
rs2540894	0.89[AMR][1000 genomes]
rs2540895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2540901	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2655976	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34970502	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs367095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs404418	1.00[AFR][1000 genomes]
rs419630	1.00[AFR][1000 genomes]
rs419869	1.00[AFR][1000 genomes]
rs71413450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs750932	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8010477	1.00[AFR][1000 genomes]
rs905734	0.87[EUR][1000 genomes]
rs905735	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2021536	TMEM63C	cis	Whole Blood	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77651800-77659000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr14:77653600-77662000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:77653800-77655800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:77654000-77665200	Weak transcription	Brain Germinal Matrix	brain
5	chr14:77654000-77666800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:77654000-77670000	Weak transcription	Brain Angular Gyrus	brain
7	chr14:77654200-77655800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:77654200-77655800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:77654200-77661800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
11	chr14:77654400-77656000	Weak transcription	Lung	lung
12	chr14:77654400-77659000	Weak transcription	Fetal Brain Male	brain
13	chr14:77654600-77659600	Weak transcription	Fetal Brain Female	brain
14	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:77654800-77655800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr14:77654800-77656200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr14:77655000-77664400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links