Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1504522	0.91[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes]
rs17750140	0.91[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2021536	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2287376	1.00[CHB][hapmap]
rs2287380	0.91[CEU][hapmap]
rs2540887	0.91[CEU][hapmap]
rs2540891	0.80[ASN][1000 genomes]
rs2540893	0.82[AMR][1000 genomes]
rs2540894	0.82[AMR][1000 genomes]
rs2540895	0.91[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2655976	0.90[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2655977	0.80[ASN][1000 genomes]
rs34002218	0.82[ASN][1000 genomes]
rs34970502	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs367095	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs374227	1.00[CEU][hapmap]
rs376645	1.00[CEU][hapmap]
rs380489	0.90[CEU][hapmap]
rs382670	1.00[CEU][hapmap]
rs382868	0.91[CEU][hapmap]
rs396750	1.00[CEU][hapmap]
rs419630	1.00[CEU][hapmap]
rs428868	1.00[CEU][hapmap]
rs451303	0.91[CEU][hapmap]
rs4903561	1.00[CEU][hapmap]
rs61004142	0.80[ASN][1000 genomes]
rs71413450	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs727921	0.86[JPT][hapmap]
rs750932	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8010477	0.91[CEU][hapmap]
rs905734	0.90[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs905735	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2540901	TMEM63C	cis	Whole Blood	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:77671000-77679200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:77671000-77685200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:77671000-77686200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:77671200-77678600	Weak transcription	Fetal Brain Female	brain
7	chr14:77671200-77679600	Weak transcription	Brain Angular Gyrus	brain
8	chr14:77673600-77683400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:77674600-77685400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:77674800-77686400	Weak transcription	Brain Substantia Nigra	brain
11	chr14:77675000-77679200	Weak transcription	Brain Anterior Caudate	brain
12	chr14:77675200-77678800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:77675400-77678200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:77675400-77679000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:77675400-77679600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:77676800-77679400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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