Variant report

Variant	rs1508299
Chromosome Location	chr14:77677709-77677710
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10141427	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10143567	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11845206	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28407451	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28909971	1.00[MEX][hapmap]
rs61151420	0.92[ASN][1000 genomes]
rs7156483	1.00[CHB][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8177541	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:77671000-77679200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:77671000-77685200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:77671000-77686200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:77671200-77678600	Weak transcription	Fetal Brain Female	brain
7	chr14:77671200-77679600	Weak transcription	Brain Angular Gyrus	brain
8	chr14:77673600-77683400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:77674600-77685400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:77674800-77686400	Weak transcription	Brain Substantia Nigra	brain
11	chr14:77675000-77679200	Weak transcription	Brain Anterior Caudate	brain
12	chr14:77675200-77678800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:77675400-77678200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:77675400-77679000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:77675400-77679600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:77676800-77679400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:77677600-77679000	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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