Variant report

Variant	rs28408985
Chromosome Location	chr4:78312311-78312312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10021013	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023142	0.92[ASN][1000 genomes]
rs12502190	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17002568	0.90[ASN][1000 genomes]
rs17002574	0.92[ASN][1000 genomes]
rs17002614	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17002672	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1962027	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28659994	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2866283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866286	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28697219	0.98[ASN][1000 genomes]
rs28715173	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28771770	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28821633	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28822468	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28844066	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28886989	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4146559	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4586976	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859826	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57255185	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57851138	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59383601	0.92[ASN][1000 genomes]
rs6832224	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6843981	0.96[ASN][1000 genomes]
rs6848365	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6849731	0.92[ASN][1000 genomes]
rs6850445	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72859841	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72859843	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72859844	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9307270	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006017	chr4:78139780-78312974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1010450	chr4:78182037-78317840	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004824	chr4:78188691-78312974	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1845782	chr4:78237955-78321598	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78312200-78316600	Weak transcription	Fetal Intestine Large	intestine

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