Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10021013	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12502190	0.92[EUR][1000 genomes]
rs17002614	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17002672	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1962027	0.86[EUR][1000 genomes]
rs28408985	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2866283	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2866286	0.92[EUR][1000 genomes]
rs28697219	0.82[ASN][1000 genomes]
rs28715173	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28771770	0.86[EUR][1000 genomes]
rs28821633	0.86[EUR][1000 genomes]
rs28822468	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28844066	0.86[EUR][1000 genomes]
rs28886989	0.86[EUR][1000 genomes]
rs4146559	0.92[EUR][1000 genomes]
rs4586976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859826	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57255185	0.86[EUR][1000 genomes]
rs57851138	0.86[EUR][1000 genomes]
rs6832224	0.86[EUR][1000 genomes]
rs6850445	0.88[EUR][1000 genomes]
rs72857763	0.98[AFR][1000 genomes]
rs72859841	0.86[EUR][1000 genomes]
rs72859843	0.86[EUR][1000 genomes]
rs72859844	0.86[EUR][1000 genomes]
rs9307270	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78332400-78333400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:78332600-78333200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:78332600-78333600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:78332800-78333400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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