Variant report

Variant	rs4859826
Chromosome Location	chr4:78294972-78294973
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78292160..78295150-chr4:78297091..78299092,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10000203	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs10021013	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10023142	0.85[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10025816	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs10031995	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs10034168	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs11724731	0.88[CHB][hapmap]
rs12502190	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1559121	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs17002568	0.82[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs17002574	0.82[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs17002578	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs17002614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002672	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs1962027	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28408985	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28470829	0.80[ASN][1000 genomes]
rs28509428	0.80[ASN][1000 genomes]
rs28510834	0.80[ASN][1000 genomes]
rs28558753	0.80[ASN][1000 genomes]
rs28659994	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2866283	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2866286	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28697219	0.99[ASN][1000 genomes]
rs28715173	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28771770	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28821633	0.92[EUR][1000 genomes]
rs28822468	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28844066	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28886989	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3886412	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs4146559	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4426805	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4447887	0.80[ASN][1000 genomes]
rs4586976	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4643843	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs4859824	0.82[YRI][hapmap]
rs57255185	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57851138	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58210020	0.80[ASN][1000 genomes]
rs58493318	0.80[ASN][1000 genomes]
rs59017002	0.80[ASN][1000 genomes]
rs59225688	0.80[ASN][1000 genomes]
rs59383601	0.93[ASN][1000 genomes]
rs59548585	0.80[ASN][1000 genomes]
rs59817506	0.80[ASN][1000 genomes]
rs60084947	0.80[ASN][1000 genomes]
rs60847680	0.80[ASN][1000 genomes]
rs61041046	0.80[ASN][1000 genomes]
rs61482056	0.80[ASN][1000 genomes]
rs61559911	0.80[ASN][1000 genomes]
rs6819777	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs6832224	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6843981	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs6848365	0.87[ASN][1000 genomes]
rs6849731	0.82[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6850445	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72859841	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72859843	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72859844	0.92[EUR][1000 genomes]
rs7657699	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[YRI][hapmap]
rs9307270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9994349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006017	chr4:78139780-78312974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1010450	chr4:78182037-78317840	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004824	chr4:78188691-78312974	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1845782	chr4:78237955-78321598	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1000392	chr4:78273146-78301467	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1011607	chr4:78273146-78302096	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3442840	chr4:78277532-78309591	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78294800-78295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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