Variant report

Variant	rs9994349
Chromosome Location	chr4:78325096-78325097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10000203	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs10021013	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10023142	0.85[CEU][hapmap];0.80[CHB][hapmap]
rs10025816	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs10031995	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs10034168	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs11724731	0.88[CHB][hapmap]
rs12502190	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[EUR][1000 genomes]
rs1559121	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs17002568	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs17002574	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs17002578	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs17002614	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17002672	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1962027	0.86[EUR][1000 genomes]
rs28408985	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28659994	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866283	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2866286	0.92[EUR][1000 genomes]
rs28697219	0.84[ASN][1000 genomes]
rs28715173	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28771770	0.86[EUR][1000 genomes]
rs28821633	0.86[EUR][1000 genomes]
rs28822468	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28844066	0.86[EUR][1000 genomes]
rs28886989	0.86[EUR][1000 genomes]
rs3886412	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs4146559	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[EUR][1000 genomes]
rs4426805	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs4586976	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4643843	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs4859826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57255185	0.86[EUR][1000 genomes]
rs57851138	0.86[EUR][1000 genomes]
rs6819777	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs6832224	0.86[EUR][1000 genomes]
rs6843981	0.85[CEU][hapmap];0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs6848365	0.81[ASN][1000 genomes]
rs6849731	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs6850445	0.88[EUR][1000 genomes]
rs72859841	0.86[EUR][1000 genomes]
rs72859843	0.86[EUR][1000 genomes]
rs72859844	0.86[EUR][1000 genomes]
rs7657699	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs9307270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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