Variant report
| Variant | rs28409907 |
|---|---|
| Chromosome Location | chr7:126416162-126416163 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
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(count:2 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
| ENSG00000048405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10230679 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10232779 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10248154 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28445142 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28622546 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28712510 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28737321 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61755403 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6962330 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6965226 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73446490 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73451274 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7801979 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
