Variant report

Variant	rs6962330
Chromosome Location	chr7:126431347-126431348
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10230679	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232779	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254454	0.87[YRI][hapmap]
rs10281480	1.00[YRI][hapmap]
rs28409907	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445142	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28622546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28712510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28737321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61755403	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6965226	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7801979	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs969175	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032612	chr7:126417533-126456282	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126429200-126431400	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:126429400-126431400	Weak transcription	Brain Substantia Nigra	brain
3	chr7:126429800-126431400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:126430800-126432600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:126430800-126432600	Enhancers	Brain Anterior Caudate	brain
6	chr7:126430800-126433400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr7:126430800-126433800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:126431000-126433600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:126431200-126432000	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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