Variant report

Variant	rs28410269
Chromosome Location	chr8:124539325-124539326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124538493..124543378-chr8:124543876..124547558,8	MCF-7	breast:
2	chr8:124539056..124542309-chr8:124551553..124555612,9	MCF-7	breast:
3	chr8:124533840..124537820-chr8:124538381..124541976,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156804	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28567692	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688371	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61559825	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834179	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124510200-124549200	Weak transcription	Fetal Brain Male	brain
2	chr8:124512000-124542200	Weak transcription	Liver	Liver
3	chr8:124515600-124543600	Weak transcription	Brain Germinal Matrix	brain
4	chr8:124520800-124542200	Weak transcription	Lung	lung
5	chr8:124525800-124542400	Weak transcription	Fetal Brain Female	brain
6	chr8:124529600-124541800	Weak transcription	Placenta	Placenta
7	chr8:124529600-124542200	Weak transcription	Pancreas	Pancrea
8	chr8:124529600-124542400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr8:124529600-124542400	Weak transcription	Spleen	Spleen
10	chr8:124530000-124542200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:124530000-124547200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:124530000-124547600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:124530400-124546200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:124531000-124546000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
15	chr8:124532200-124542800	Genic enhancers	Colon Smooth Muscle	Colon
16	chr8:124532200-124543600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
17	chr8:124532800-124542200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:124533000-124541600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:124533400-124543600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:124533600-124540400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:124533600-124540400	Weak transcription	HSMM	muscle
22	chr8:124533800-124552000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr8:124534000-124539400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:124534200-124539600	Weak transcription	HMEC	breast
25	chr8:124534200-124542200	Weak transcription	Fetal Thymus	thymus
26	chr8:124534200-124542400	Strong transcription	HSMMtube	muscle
27	chr8:124534400-124543600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr8:124534600-124540200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr8:124534600-124540400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:124534800-124539400	Strong transcription	Brain Hippocampus Middle	brain
31	chr8:124534800-124540400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr8:124534800-124540400	Strong transcription	Ovary	ovary
33	chr8:124535000-124542000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr8:124535200-124539800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:124535200-124542000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:124535200-124542400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr8:124535400-124541800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr8:124535400-124542200	Weak transcription	Right Atrium	heart
39	chr8:124535400-124542400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr8:124535400-124543600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:124535600-124542400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr8:124535600-124543600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr8:124536200-124540000	Weak transcription	Osteobl	bone
44	chr8:124536400-124540400	Strong transcription	Fetal Muscle Leg	muscle
45	chr8:124536400-124545600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr8:124536600-124543600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr8:124536800-124545600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:124537000-124539800	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr8:124537200-124543600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr8:124537400-124539400	Weak transcription	Psoas Muscle	Psoas

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