Variant report

Variant	rs7834179
Chromosome Location	chr8:124529004-124529005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124498534..124499272-chr8:124528678..124529477,2	MCF-7	breast:
2	chr8:124527950..124529470-chr8:124546370..124548272,2	MCF-7	breast:
3	chr8:124522912..124526262-chr8:124527454..124531580,5	K562	blood:
4	chr8:124526109..124530127-chr8:124530689..124534249,3	MCF-7	breast:
5	chr8:124528561..124530260-chr8:124550989..124553746,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156804	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16898473	1.00[CEU][hapmap]
rs28410269	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28567692	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688371	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61559825	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124510200-124549200	Weak transcription	Fetal Brain Male	brain
2	chr8:124510400-124531800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:124512000-124542200	Weak transcription	Liver	Liver
4	chr8:124512400-124532600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:124514000-124529200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:124514200-124529400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:124515600-124543600	Weak transcription	Brain Germinal Matrix	brain
8	chr8:124519400-124532600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:124520800-124532400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:124520800-124542200	Weak transcription	Lung	lung
11	chr8:124525000-124529400	Enhancers	Brain Substantia Nigra	brain
12	chr8:124525000-124530400	Enhancers	Fetal Muscle Leg	muscle
13	chr8:124525400-124529400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:124525800-124542400	Weak transcription	Fetal Brain Female	brain
15	chr8:124526400-124537600	Weak transcription	Gastric	stomach
16	chr8:124526600-124532200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:124527400-124531600	Enhancers	Fetal Heart	heart
18	chr8:124528000-124529800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:124528000-124529800	Enhancers	Aorta	Aorta
20	chr8:124528000-124530200	Enhancers	Brain Angular Gyrus	brain
21	chr8:124528200-124529400	Enhancers	Left Ventricle	heart
22	chr8:124528200-124530600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:124528200-124531400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr8:124528400-124529200	Enhancers	Right Ventricle	heart
25	chr8:124528400-124529400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:124528400-124529400	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr8:124528400-124529400	Genic enhancers	Thymus	Thymus
28	chr8:124528400-124529600	Enhancers	Placenta	Placenta
29	chr8:124528400-124529800	Enhancers	Fetal Lung	lung
30	chr8:124528400-124530000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:124528400-124530000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:124528400-124530000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr8:124528400-124530000	Enhancers	Fetal Stomach	stomach
34	chr8:124528400-124530000	Enhancers	Fetal Thymus	thymus
35	chr8:124528400-124530200	Enhancers	Dnd41	blood
36	chr8:124528400-124530200	Enhancers	HSMM	muscle
37	chr8:124528400-124530200	Enhancers	NHLF	lung
38	chr8:124528400-124530400	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr8:124528400-124530400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr8:124528400-124530800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr8:124528400-124531000	Enhancers	NH-A	brain
42	chr8:124528400-124531200	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr8:124528400-124531200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr8:124528400-124532400	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr8:124528400-124532800	Enhancers	Primary T cells fromperipheralblood	blood
46	chr8:124528400-124535400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr8:124528600-124529200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr8:124528600-124529200	Enhancers	Psoas Muscle	Psoas
49	chr8:124528600-124529200	Enhancers	A549	lung
50	chr8:124528600-124529200	Enhancers	Hela-S3	cervix

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