Variant report

Variant	rs28567692
Chromosome Location	chr8:124532809-124532810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124530339..124532901-chr8:124542582..124544213,2	MCF-7	breast:
2	chr8:124530995..124533872-chr8:124550796..124552419,2	MCF-7	breast:
3	chr8:124530920..124533567-chr8:124536352..124538729,2	K562	blood:
4	chr8:124526109..124530127-chr8:124530689..124534249,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28410269	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688371	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61559825	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834179	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124510200-124549200	Weak transcription	Fetal Brain Male	brain
2	chr8:124512000-124542200	Weak transcription	Liver	Liver
3	chr8:124515600-124543600	Weak transcription	Brain Germinal Matrix	brain
4	chr8:124520800-124542200	Weak transcription	Lung	lung
5	chr8:124525800-124542400	Weak transcription	Fetal Brain Female	brain
6	chr8:124526400-124537600	Weak transcription	Gastric	stomach
7	chr8:124528400-124535400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:124528600-124533000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr8:124528600-124534000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:124528600-124534200	Enhancers	HMEC	breast
11	chr8:124528600-124535400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr8:124529400-124534800	Weak transcription	Esophagus	oesophagus
13	chr8:124529600-124535400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:124529600-124536200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:124529600-124541800	Weak transcription	Placenta	Placenta
16	chr8:124529600-124542200	Weak transcription	Pancreas	Pancrea
17	chr8:124529600-124542400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr8:124529600-124542400	Weak transcription	Spleen	Spleen
19	chr8:124529800-124534200	Enhancers	Osteobl	bone
20	chr8:124529800-124537000	Weak transcription	Fetal Intestine Large	intestine
21	chr8:124529800-124537400	Weak transcription	Stomach Mucosa	stomach
22	chr8:124530000-124533600	Weak transcription	Brain Anterior Caudate	brain
23	chr8:124530000-124534800	Weak transcription	Ovary	ovary
24	chr8:124530000-124537200	Weak transcription	Fetal Intestine Small	intestine
25	chr8:124530000-124542200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:124530000-124547200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:124530000-124547600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr8:124530200-124533400	Weak transcription	NHLF	lung
29	chr8:124530400-124533600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:124530400-124537200	Weak transcription	Small Intestine	intestine
31	chr8:124530400-124537400	Weak transcription	Colonic Mucosa	Colon
32	chr8:124530400-124546200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:124530800-124537200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr8:124531000-124534200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:124531000-124534200	Genic enhancers	HSMMtube	muscle
36	chr8:124531000-124534800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr8:124531000-124535400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:124531000-124536000	Weak transcription	Adipose Nuclei	Adipose
39	chr8:124531000-124536800	Weak transcription	Brain Substantia Nigra	brain
40	chr8:124531000-124546000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
41	chr8:124531200-124533600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:124531200-124533800	Weak transcription	Brain Angular Gyrus	brain
43	chr8:124531400-124533000	Weak transcription	Psoas Muscle	Psoas
44	chr8:124531400-124534800	Weak transcription	Right Atrium	heart
45	chr8:124531400-124534800	Weak transcription	HUVEC	blood vessel
46	chr8:124531800-124533800	Enhancers	Primary hematopoietic stem cells	blood
47	chr8:124532000-124533000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr8:124532000-124533200	Enhancers	HSMM	muscle
49	chr8:124532000-124533800	Enhancers	NH-A	brain
50	chr8:124532000-124534200	Enhancers	Fetal Thymus	thymus

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