Variant report

Variant	rs28415783
Chromosome Location	chr15:49269976-49269977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49268857..49270677-chr15:49272053..49274783,2	MCF-7	breast:
2	chr15:49182831..49185512-chr15:49268334..49270232,2	K562	blood:
3	chr15:49153994..49156769-chr15:49268113..49270710,2	K562	blood:
4	chr15:49187683..49189861-chr15:49266897..49270181,3	K562	blood:
5	chr15:49267072..49270611-chr15:49335980..49339433,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28378118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28402686	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28405746	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28419571	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465287	1.00[AFR][1000 genomes]
rs28474906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28477793	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28542231	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608643	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28627570	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655552	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171758	1.00[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268400-49270000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:49268600-49270800	Weak transcription	Gastric	stomach
3	chr15:49268600-49276000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:49268600-49279400	Weak transcription	HSMM	muscle
5	chr15:49268600-49282000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:49268600-49282600	Weak transcription	Right Ventricle	heart
7	chr15:49268800-49270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:49268800-49273800	Weak transcription	Placenta	Placenta
9	chr15:49268800-49273800	Weak transcription	HMEC	breast
10	chr15:49268800-49273800	Weak transcription	K562	blood
11	chr15:49268800-49274000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:49268800-49283200	Weak transcription	Fetal Brain Male	brain
13	chr15:49268800-49283400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:49268800-49283600	Weak transcription	Colonic Mucosa	Colon
15	chr15:49268800-49284400	Weak transcription	Esophagus	oesophagus
16	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:49269000-49270400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:49269000-49270800	Weak transcription	Dnd41	blood
19	chr15:49269000-49272000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:49269000-49274000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:49269000-49274000	Weak transcription	Brain Angular Gyrus	brain
22	chr15:49269000-49276400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:49269000-49280000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:49269000-49282800	Weak transcription	Fetal Brain Female	brain
25	chr15:49269000-49284400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:49269000-49284400	Weak transcription	Spleen	Spleen
27	chr15:49269200-49270200	Enhancers	HepG2	liver
28	chr15:49269200-49272800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:49269200-49273800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:49269200-49274000	Weak transcription	Brain Anterior Caudate	brain
31	chr15:49269200-49274000	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:49269200-49274000	Weak transcription	Brain Substantia Nigra	brain
33	chr15:49269200-49274200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:49269200-49276800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:49269200-49277200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:49269200-49282600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:49269200-49283600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:49269800-49275600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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