Variant report

Variant	rs28477793
Chromosome Location	chr15:49267172-49267173
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:49253722..49256715-chr15:49265882..49268757,2	MCF-7	breast:
2	chr15:49258386..49260621-chr15:49266484..49269141,3	K562	blood:
3	chr15:49169574..49171086-chr15:49266545..49268420,2	K562	blood:
4	chr15:49187683..49189861-chr15:49266897..49270181,3	K562	blood:
5	chr15:49258386..49260544-chr15:49265731..49268433,2	K562	blood:
6	chr15:49266662..49269638-chr15:49272443..49274306,3	K562	blood:
7	chr15:49267072..49270611-chr15:49335980..49339433,4	MCF-7	breast:
8	chr15:49266790..49269088-chr15:49275755..49278343,2	MCF-7	breast:
9	chr15:49264856..49267674-chr15:49448435..49450071,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255302	Chromatin interaction
ENSG00000259467	Chromatin interaction
ENSG00000138593	Chromatin interaction
ENSG00000185634	Chromatin interaction
ENSG00000235883	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28378118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28402686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28405746	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28415783	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28419571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465287	0.93[AFR][1000 genomes]
rs28474906	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28542231	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608643	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28627570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655552	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171758	1.00[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49256400-49267200	Weak transcription	Aorta	Aorta
2	chr15:49259600-49267400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr15:49260200-49267800	Weak transcription	HSMM	muscle
4	chr15:49260800-49267200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:49263800-49267800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:49265200-49267800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:49265400-49267800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:49265600-49268000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:49265800-49268000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:49266200-49268000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:49266400-49267200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:49266600-49267200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:49266600-49267200	Enhancers	Brain Hippocampus Middle	brain
14	chr15:49266600-49267400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:49266600-49267400	Weak transcription	NHEK	skin
16	chr15:49266800-49267200	Enhancers	Brain Anterior Caudate	brain
17	chr15:49266800-49267200	Enhancers	Brain Substantia Nigra	brain
18	chr15:49266800-49267400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr15:49266800-49267400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr15:49266800-49267400	Enhancers	Brain Germinal Matrix	brain
21	chr15:49266800-49267400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr15:49266800-49267400	Enhancers	Fetal Brain Male	brain
23	chr15:49266800-49267600	Enhancers	Fetal Lung	lung
24	chr15:49266800-49267600	Enhancers	NHLF	lung
25	chr15:49266800-49268600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr15:49267000-49267200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:49267000-49267200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:49267000-49267200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr15:49267000-49267200	Enhancers	HepG2	liver
30	chr15:49267000-49267400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr15:49267000-49267400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr15:49267000-49267400	Enhancers	Brain Cingulate Gyrus	brain
33	chr15:49267000-49267600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:49267000-49267600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr15:49267000-49267600	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr15:49267000-49267600	Active TSS	Stomach Smooth Muscle	stomach
37	chr15:49267000-49267600	Enhancers	K562	blood

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