Variant report

Variant	rs28419571
Chromosome Location	chr15:49262128-49262129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28378118	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28402686	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28405746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28415783	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465287	0.81[AFR][1000 genomes]
rs28474906	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28477793	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28542231	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608643	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28627570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655552	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171758	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974571	chr15:49261586-49265668	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49256400-49266800	Weak transcription	Brain Substantia Nigra	brain
2	chr15:49256400-49267200	Weak transcription	Aorta	Aorta
3	chr15:49256800-49265200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:49259400-49265200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:49259600-49262800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:49259600-49263000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:49259600-49263000	Weak transcription	NHDF-Ad	bronchial
8	chr15:49259600-49267400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:49260200-49263000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:49260200-49267800	Weak transcription	HSMM	muscle
11	chr15:49260800-49267200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:49261800-49262200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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