Variant report

Variant	rs28419716
Chromosome Location	chr8:108514020-108514021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108507981..108510207-chr8:108513209..108515922,2	K562	blood:
2	chr8:108510326..108512343-chr8:108512433..108514232,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1433169	1.00[ASW][hapmap]
rs1433171	1.00[ASW][hapmap]
rs16876325	1.00[ASW][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845767	chr8:108504907-108515373	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1849422	chr8:108504907-108515373	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1825455	chr8:108504907-108518274	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108510400-108515000	Weak transcription	Left Ventricle	heart
2	chr8:108510400-108515200	Weak transcription	Ovary	ovary
3	chr8:108510600-108514200	Enhancers	Osteobl	bone
4	chr8:108511800-108518600	Weak transcription	Fetal Kidney	kidney
5	chr8:108512200-108516000	Weak transcription	Aorta	Aorta
6	chr8:108512200-108517400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:108512200-108518600	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:108512200-108520200	Weak transcription	Psoas Muscle	Psoas
9	chr8:108512400-108515800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:108512400-108516200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:108512400-108521200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:108513000-108514200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:108513200-108514200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:108513600-108514400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr8:108513600-108517400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:108513800-108515400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:108513800-108516400	Weak transcription	HSMM	muscle
18	chr8:108513800-108516600	Weak transcription	HUVEC	blood vessel
19	chr8:108514000-108515400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:108514000-108515400	Weak transcription	NH-A	brain
21	chr8:108514000-108516000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:108514000-108516200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:108514000-108516400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:108514000-108517200	Weak transcription	NHDF-Ad	bronchial

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